He and Barry Sonnenfeld (who is now directing the Netflix series) were both originally involved in the movie before leaving because of budget concerns or something of the sort. Honestly I'm glad there is room in the world for both the film and the TV series.
Unfortunate Associates: Daniel Handler/Lemony Snicket Interview! | Future Horse
Podcast/audio interview alert! I haven't had time to listen yet, but he is always a delight and I'm sure this is no different.